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Registro Completo |
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
29/08/2014 |
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Data da última atualização: |
26/06/2023 |
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Tipo da produção científica: |
Artigo em Anais de Congresso |
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Autoria: |
URBITANI, I.; BUZANSKAS, M. E.; CHUD, T. C. S.; MORKRY, F. B; HIGA, R. H.; REGITANO, L. C. de A.; MUNARI, D. P. |
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Afiliação: |
ISMAEL URBINATI, UNESP/FCAV/JABOTICABAL; MARCOS E. BUZANSKAS, UNESP/JABOTICABAL; T. C. S. CHUD, UNSP/FCAV/JABOTICABAL; FABIANA BARICHELLO MORKRY, UFSCar/SÃO CARLOS, SP; ROBERTO HIROSHI HIGA, CNPTIA; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; D. P. MUNARI, PROF. UNES/FCAV/JABOTICABAL. |
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Título: |
Selection signatures in Canchim beef cattle. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
In:WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings...Vancouver: WCGALP: Amarican Society of Animal Science, 2014. |
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Idioma: |
Português |
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Conteúdo: |
Selection signature (SS) was assessed in this study by means of the integrated haplotype score (iHS) method, which determines the decay of homozygosity in the surroundings of a core single nucleotide polymorphism (SNP) marker. Canchim breed animals were genotyped using the Illumina BovineHD BeadChip; which has almost 800 thousand SNP markers. Genotype quality control (QC) was applied to exclude SNP with genotype calling score lower than 0.20; SNP with minor allele frequency lower than 0.01; and call rate for SNP and samples which were lower than 0.95 and 0.90, respectively. Only autosomal SNPs with known genome position were used. After the QC, 687,655 SNPs and 396 samples remained for SS analysis. Signals of SS were detected on chromosomes 5, 6, 8, and 14, indicating that these regions are conserved through recent generations. |
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Palavras-Chave: |
EHH; IHS; REHH PACKAGE. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/108199/1/712-paper-3934-manuscript-1530-0075C9D34547F.pdf
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Marc: |
LEADER 01524nam a2200217 a 4500
001 1993734
005 2023-06-26
008 2014 bl uuuu u00u1 u #d
100 1 $aURBITANI, I.
245 $aSelection signatures in Canchim beef cattle.$h[electronic resource]
260 $aIn:WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings...Vancouver: WCGALP: Amarican Society of Animal Science$c2014
520 $aSelection signature (SS) was assessed in this study by means of the integrated haplotype score (iHS) method, which determines the decay of homozygosity in the surroundings of a core single nucleotide polymorphism (SNP) marker. Canchim breed animals were genotyped using the Illumina BovineHD BeadChip; which has almost 800 thousand SNP markers. Genotype quality control (QC) was applied to exclude SNP with genotype calling score lower than 0.20; SNP with minor allele frequency lower than 0.01; and call rate for SNP and samples which were lower than 0.95 and 0.90, respectively. Only autosomal SNPs with known genome position were used. After the QC, 687,655 SNPs and 396 samples remained for SS analysis. Signals of SS were detected on chromosomes 5, 6, 8, and 14, indicating that these regions are conserved through recent generations.
653 $aEHH
653 $aIHS
653 $aREHH PACKAGE
700 1 $aBUZANSKAS, M. E.
700 1 $aCHUD, T. C. S.
700 1 $aMORKRY, F. B
700 1 $aHIGA, R. H.
700 1 $aREGITANO, L. C. de A.
700 1 $aMUNARI, D. P.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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Registro Completo
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Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
09/12/2015 |
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Data da última atualização: |
26/04/2024 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
SILVA JUNIOR, O. B. da; FARIA, D. A.; GRATTAPAGLIA, D. |
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Afiliação: |
ORZENIL BONFIM DA SILVA JUNIOR, CENARGEN; DANIELLE A. FARIA; DARIO GRATTAPAGLIA, CENARGEN. |
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Título: |
A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species. |
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Ano de publicação: |
2015 |
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Fonte/Imprenta: |
New Phytologist, v. 206, n. 4, p. 1527(14), 2015. |
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Idioma: |
Inglês |
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Palavras-Chave: |
Pooled resequencing; Single-nucleotide polymorphism (SNP) ascertainment bias; Trans-spe. |
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Thesagro: |
Myrtaceae. |
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Thesaurus NAL: |
population structure. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/135248/1/silva-junior2015.pdf
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Marc: |
LEADER 00681naa a2200193 a 4500
001 2031208
005 2024-04-26
008 2015 bl uuuu u00u1 u #d
100 1 $aSILVA JUNIOR, O. B. da
245 $aA flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species.$h[electronic resource]
260 $c2015
650 $apopulation structure
650 $aMyrtaceae
653 $aPooled resequencing
653 $aSingle-nucleotide polymorphism (SNP) ascertainment bias
653 $aTrans-spe
700 1 $aFARIA, D. A.
700 1 $aGRATTAPAGLIA, D.
773 $tNew Phytologist$gv. 206, n. 4, p. 1527(14), 2015.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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